MEDYAN Publications

This page lists publications using MEDYAN in chronological order.


  1. Q Ni and GA Papoian (2019). Turnover versus treadmilling in actin network assembly and remodeling. Cytoskeleton. [Article]
  2. A Chandrasekaran, A Upadhyaya and GA Papoian (2019). Remarkable structural transformations of actin bundles are driven by their initial polarity, motor activity, crosslinking, and filament treadmilling. PLoS Comp Bio. [Article]
  3. C Floyd, GA Papoian and C Jarzynski (2019). Quantifying dissipation in actomyosin networks. Interface Focus. [Article]
  4. 2018

  5. JE Komianos and GA Papoian (2018). Stochastic Ratcheting on a Funneled Energy Landscape Is Necessary for Highly Efficient Contractility of Actomyosin Force Dipoles. Phys Rev X. doi:10.1103/PhysRevX.8.021006
  6. 2017

  7. C Floyd, C Jarzynski and GA Papoian (2017). Low-dimensional manifold of actin polymerization dynamics. New Journal of Physics. [Article]
  8. 2016

  9. K Popov, JE Komianos and GA Papoian (2016) MEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin Networks. PLoS Comput Biol 12(4): e1004877. doi:10.1371/journal.pcbi.1004877