Table of Contents
Functions
Define a System
Construct a Context
MEDYAN.ContextCubicGriddeepcopy, note: rng is shared
Mutate a Context
Performance Tuning
Balls
Filaments
make_fila!make_fila_rand!remove_fila!update_fila_mono_state!polymerize_fila!depolymerize_fila!sever_fila!num_fila_typesfila_type_namefila_typeidnum_filafila_mono_idsfila_mono_statesfila_num_nodesfila_node_midsfila_node_positionsfila_chem_positionsfila_tip_tagsfila_num_unmin_endsfila_load_forcefila_tip_snapshotfila_tip_extensionset_fila_tip_extension!pick_rand_fila_mono_sitepick_rand_fila_tip_site
Membranes
Links
PlaceFilaIdxFilaTipIdxFilaMonoIdxMembVertIdxAnchorBallIdxTagtag!make_link!remove_link!update_link!make_anchor!remove_anchor!update_anchor!num_link_typeslink_type_namelink_typeidget_all_linksget_all_tagstag2linksplace2linkstag_existsplace_existslink_existslink2tagstag2placeplace2taghas_tagget_positionnum_directionsget_directionsget_material_frameget_chem_stateget_stateget_bond_statesget_bond_enabledget_reaction_enabledis_minimizedget_link_mechanics